Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs59124739 chr8:39928809 T/G 8.75E-5 119 40.67 42.73 28.43 KM Plot
THYM rs59130673 chr8:39930342 A/G 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs59141944 chr4:12545028 T/C 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs59262522 chr11:11852629 T/A 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs59337170 chr9:97121812 A/T 9.49E-5 117 41.77 44.3 17.03 KM Plot
THYM rs59544360 chr4:1313575 G/T 4.67E-7 119 41.77 47.97 19.23 KM Plot
THYM rs59549932 chr5:67017952 TA/T 1.78E-15 114 42.9 49.95 12.63 KM Plot
THYM rs59586667 chr5:67015214 G/T 4.37E-8 118 44.38 39.45 12.93 KM Plot
THYM rs59655970 chr8:50202999 G/A 2.31E-10 119 46.07 50.82 25.83 KM Plot
THYM rs59728541 chr15:94811576 ATT/A 6.1E-6 116 25.83 27.3 44.38 KM Plot
THYM rs59934641 chr13:26631147 G/A 3.01E-6 118 41.77 40.67 13.75 KM Plot
THYM rs59957636 chr7:29688100 A/G 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs60080531 chr4:8486999 C/T 4.66E-5 116 44.3 35 20.5 KM Plot
THYM rs60161272 chr7:29703003 C/A 5.23E-13 118 37.63 46.27 6 KM Plot
THYM rs60215074 chr8:39945207 T/C 8.94E-5 119 39.75 48.13 28.43 KM Plot